STR F0 kinetics


STR kinetic analysis using minimal fluorescence
//============================================
// Macro for data evaluation on PhotosynQ.org
// created: 2.11.2017
//============================================

//Define the output object here
var data = json.data_raw;
var output = {};
var Fs = {};
var PhiII = {};
var baseline = 0;

var light_intensity =  {};




// initial values of F0 and Fm from dark adapted state.

var F0 = MathMEAN(data.slice(10,20)) - baseline;
var Fm = MathMEAN(data.slice(35,65)) - baseline;
var fvfm = (Fm-F0)/Fm;
output ["F0"] = MathROUND(F0,0);
output ["Fm"] = MathROUND(Fm,0);
output ["Fv/Fm"] = MathROUND(fvfm,3);

var F0P1 = MathMEAN(data.slice(95,125)) - baseline;
var FmP1 = MathMEAN(data.slice(140,170)) - baseline;
var fvfmP1 = (FmP1-F0P1)/FmP1;
output ["F0P1"] = MathROUND(F0P1,0);


var F0P2 = MathMEAN(data.slice(170,200)) - baseline;
var FmP2 = MathMEAN(data.slice(270,295)) - baseline;
var fvfmP2 = (FmP2-F0P2)/FmP2;
output ["F0P2"] = MathROUND(F0P2,0);
;

var F0P3 = MathMEAN(data.slice(255,280)) - baseline;
var FmP3 = MathMEAN(data.slice(410,435)) - baseline;
var fvfmP3 = (FmP3-F0P3)/FmP3;
output ["F0P3"] = MathROUND(F0P3,0);


var F0P4 = MathMEAN(data.slice(330,360)) - baseline;
var FmP4 = MathMEAN(data.slice(530,555)) - baseline;
var fvfmP4 = (FmP4-F0P4)/FmP4;
output ["F0P4"] = MathROUND(F0P4,0);


var F0P5 = MathMEAN(data.slice(410,445)) - baseline;
var FmP5 = MathMEAN(data.slice(795,820)) - baseline;
var fvfmP5 = (FmP5-F0P5)/FmP5;
output ["F0P5"] = MathROUND(F0P5,0);


var F0P6 = MathMEAN(data.slice(495,525)) - baseline;
var FmP6 = MathMEAN(data.slice(950,980)) - baseline;
var fvfmP6 = (FmP6-F0P6)/FmP6;
output ["F0P6"] = MathROUND(F0P6,0);


var F0P7 = MathMEAN(data.slice(605,635)) - baseline;
var FmP7 = MathMEAN(data.slice(1110,1140)) - baseline;
var fvfmP7 = (FmP7-F0P7)/FmP7;
output ["F0P7"] = MathROUND(F0P7,0);


var F0P8 = MathMEAN(data.slice(710,745)) - baseline;
var FmP8 = MathMEAN(data.slice(1275,1300)) - baseline;
var fvfmP8 = (FmP8-F0P8)/FmP8;
output ["F0P8"] = MathROUND(F0P8,0);


var F0P9 = MathMEAN(data.slice(820,855)) - baseline;
var FmP9 = MathMEAN(data.slice(1430,1460)) - baseline;
var fvfmP9 = (FmP9-F0P9)/FmP9;
output ["F0P9"] = MathROUND(F0P9,0);


var F0P10 = MathMEAN(data.slice(935,965)) - baseline;
var FmP10 = MathMEAN(data.slice(1600,1620)) - baseline;
var fvfmP10 = (FmP10-F0P10)/FmP10;
output ["F0P10"] = MathROUND(F0P10,0);


var F0P11 = MathMEAN(data.slice(1040,1070)) - baseline;
var FmP11 = MathMEAN(data.slice(1750,1780)) - baseline;
var fvfmP11 = (FmP11-F0P11)/FmP11;
output ["F0P11"] = MathROUND(F0P11,0);


var F0P12 = MathMEAN(data.slice(1150,1180)) - baseline;
var FmP12 = MathMEAN(data.slice(1915,1940)) - baseline;
var fvfmP12 = (FmP12-F0P12)/FmP12;
output ["F0P12"] = MathROUND(F0P12,0);


var F0P13 = MathMEAN(data.slice(1260,1290)) - baseline;
var FmP13 = MathMEAN(data.slice(2130,2160)) - baseline;
var fvfmP13 = (FmP13-F0P13)/FmP13;
output ["F0P13"] = MathROUND(F0P13,0);


var F0P14 = MathMEAN(data.slice(1430,1465)) - baseline;
var FmP14 = MathMEAN(data.slice(2355,2385)) - baseline;
var fvfmP14 = (FmP14-F0P14)/FmP14;
output ["F0P14"] = MathROUND(F0P14,0);


var F0P15 = MathMEAN(data.slice(1600,1635)) - baseline;
var FmP15 = MathMEAN(data.slice(2565,2600)) - baseline;
var fvfmP15 = (FmP15-F0P15)/FmP15;
output ["F0P15"] = MathROUND(F0P15,0);


var F0P16 = MathMEAN(data.slice(1765,1800)) - baseline;
var FmP16 = MathMEAN(data.slice(1820,1850)) - baseline;
var fvfmP16 = (FmP16-F0P16)/FmP16;
output ["F0P16"] = MathROUND(F0P16,0);
output ["FmP16"] = MathROUND(FmP16,0);
output ["Fv/Fm P16"] = MathROUND(fvfmP16,3);




var relSTR1 = (FmP1-Fm)/Fm;
var relSTR2 = (FmP2-Fm)/Fm;
var relSTR3 = (FmP3-Fm)/Fm;
var relSTR4 = (FmP4-Fm)/Fm;
var relSTR5 = (FmP5-Fm)/Fm;
var relSTR6 = (FmP6-Fm)/Fm;
var relSTR7 = (FmP7-Fm)/Fm;
var relSTR8 = (FmP8-Fm)/Fm;
var relSTR9 = (FmP9-Fm)/Fm;
var relSTR10 = (FmP10-Fm)/Fm;
var relSTR11 = (FmP11-Fm)/Fm;
var relSTR12 = (FmP12-Fm)/Fm;
var relSTR13 = (FmP13-Fm)/Fm;
var relSTR14 = (FmP14-Fm)/Fm;
var relSTR15 = (FmP15-Fm)/Fm;
var relSTR16 = (FmP16-Fm)/Fm;

output ["relSTR 1"] = MathROUND(relSTR1,3);
output ["relSTR 2"] = MathROUND(relSTR2,3);
output ["relSTR 3"] = MathROUND(relSTR3,3);
output ["relSTR 4"] = MathROUND(relSTR4,3);
output ["relSTR 5"] = MathROUND(relSTR5,3);
output ["relSTR 6"] = MathROUND(relSTR6,3);
output ["relSTR 7"] = MathROUND(relSTR7,3);
output ["relSTR 8"] = MathROUND(relSTR8,3);
output ["relSTR 9"] = MathROUND(relSTR9,3);
output ["relSTR 10"] = MathROUND(relSTR10,3);
output ["relSTR 11"] = MathROUND(relSTR11,3);
output ["relSTR 12"] = MathROUND(relSTR12,3);
output ["relSTR 13"] = MathROUND(relSTR13,3);
output ["relSTR 14"] = MathROUND(relSTR14,3);
output ["relSTR 15"] = MathROUND(relSTR15,3);
output ["relSTR 16"] = MathROUND(relSTR16,3);

// illumination period

     
    

  
    
 //output ["Fs " + i] = MathROUND(Fs [i], 0);
 //output ["Fm' " + i] = MathROUND(FmP [i],0);
 //output ["F0' calc " + i] = MathROUND(f0p [i],0);
 //output ["PhiII " + i] = MathROUND(PhiII [i],3);
 

          




var thickness = json.thickness;
output ["thickness - mm "] = MathROUND(thickness , 4);

output ["baseline" ] = baseline;

output["Light Intensity (PAR)"] = json.light_intensity;
output["Temperature"] = json.temperature;
output["Humidity"] = json.humidity;
output["Pressure"] = json.pressure;
return output;
{
  "time_offset": -60,
  "time": 1510317325477,
  "device_name": "MultispeQ",
  "device_version": "1",
  "device_id": "01:06:11:94",
  "device_battery": 85,
  "device_firmware": 1.17,
  "sample": [
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  ],
  "app_os": "win",
  "app_name": "PhotosynQ",
  "app_version": "0.3.9",
  "app_device": "x86-32",
  "location": [
    "50.1563532",
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  ],
  "ConsoleMacro": null
}
Default avatar
Created by

Lars Dietzel


Protocol connections:
1
Latest Update:
Nov 2017