v1.0 CALIBRATION: Light Box to MultispeQ PAR


goes with protocol of same name
// Set our initial variables and conditions
var data = json.data_raw;
var output = {};   // location to save output variables
var intensityArray = [100,200,300,600,1200,2400];  // DAC intensities set in the protocol for red LED (light 2)
var averages = 30; // number of adc averages during each intensity setting
var intensities = intensityArray.length; 

// first make an array of the LiCOR calculated values based on the previous protocol measuring LiCOR under the same light conditions

var slope = json.recall["userdef[1]"];
var yint = json.recall["userdef[2]"];

var parIntensityArray = [];  // actual PAR values based on LiCOR Par meter

for (var i = 0; i < intensities; i++) {
//  parIntensityArray[i] = MathROUND(Number((intensityArray[i] - yint)/slope),2);  
  parIntensityArray[i] = MathROUND(Number(json.recall["userdef["+(i+1)+"]"]));  // COMMENT BACK IN! set each one from the saved values  
}

// Now set up array of the MultispeQ LiCOR (x 2) values, one for each sensor

var multispeqParIntensityArray = [];

for (var i = 0; i < intensities; i++) {
  var thisValue = 0;
  for (var j = 0; j < averages; j++) {
    thisValue += Number(json.adc_read[i*averages + j]);
  }
  multispeqParIntensityArray[i] = MathROUND(thisValue/averages,2);
//  output["thiThing"] = thisValue;
}

output["MultispeQ LiCOR response raw"] = json.adc_read;
output["MultispeQ LiCOR response averaged"] = multispeqParIntensityArray;

output["multispeqParIntensityArray"] = "";
for (var i = 0; i < multispeqParIntensityArray.length; i++) {
  output["multispeqParIntensityArray"] += multispeqParIntensityArray[i] + ",";
}

output["parIntensityArray"] = "";
for (var i = 0; i < parIntensityArray.length; i++) {
  output["parIntensityArray"] += parIntensityArray[i] + ",";
}

output["intensityArray_numbers"] = "";
for (var i = 0; i < intensityArray.length; i++) {
  output["intensityArray_numbers"] += intensityArray[i] + ",";
}

// Now run a linear regression to correlate DAC value to LiCOR PAR value
var model = MathLINREG(multispeqParIntensityArray, parIntensityArray);
var aNumber = 1;
// compare actual versus predicted and print the model information
output["actual"] = parIntensityArray[aNumber];
output["predicted"] = multispeqParIntensityArray[aNumber]*model.m + model.b;
output["slope"] = MathROUND(model.m,3);
output["y-int"] = MathROUND(model.b,3);
output["rsquared"] = MathROUND(model.r,3);

// Figure out which MultispeQ LiCOR sensor is being measured (1 or 2)
// if sensor 1, save in userdef[7] and userdef[8].  If sensor 2, save in userdef[9] and userdef[10]
sensorNumber = json.message[0][1][1];
output["sensorNumber"] = sensorNumber;
output["toDevice"] = "set_user_defined+";

if (sensorNumber == 1) {
output["toDevice"] += "7+";
output["toDevice"] += MathROUND(model.m,3)+"+";
output["toDevice"] += "8+";
output["toDevice"] += MathROUND(model.b,3)+"+";
output["toDevice"] += "-1+";
}
else if (sensorNumber == 2) {
output["toDevice"] += "9+";
output["toDevice"] += MathROUND(model.m,3)+"+";
output["toDevice"] += "10+";
output["toDevice"] += MathROUND(model.b,3)+"+";
output["toDevice"] += "-1+";
}

return output;
{
  "time_offset": 240,
  "time": 1475688221270,
  "device_version": "1",
  "device_id": "d4:f5:00:00:00:00",
  "device_battery": 92,
  "device_firmware": "1.08",
  "firmware_version": "1.08",
  "device_time": 1475501864,
  "sample": [
    [
      {
        "time": 1475688224495,
        "protocol_id": 1,
        "message": [
          [
            "alert",
            " 2 Place MultispeQ LiCOR 2 in the light chamber make sure its correctly seated",
            "ok"
          ],
          [
            "0",
            "0",
            ""
          ],
          [
            "0",
            "0",
            ""
          ],
          [
            "0",
            "0",
            ""
          ],
          [
            "0",
            "0",
            ""
          ],
          [
            "0",
            "0",
            ""
          ],
          [
            "0",
            "0",
            ""
          ]
        ],
        "recall": {
          "time": 1475688245266,
          "userdef[1]": 13.82,
          "userdef[2]": 43.830002,
          "userdef[3]": 74.559998,
          "userdef[4]": 168.199997,
          "userdef[5]": 351.299988,
          "userdef[6]": 713.400024
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    ]
  ],
  "app_os": "linux",
  "app_name": "PhotosynQ",
  "app_version": "0.3.5",
  "app_device": "x86-64",
  "location": [
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  ]
}
012409 pbi 160 low low res headshot
Created by

Greg Austic


Protocol connections:
5
Latest Update:
Oct 2016