trWASP1d


goes with simple firk
/**
 * Macro for data evaluation on PhotosynQ.org
 * by: David M. Kramer
 * created: September 13, 2018 1:43 PM
 */
 
 // Define the output object here 
var output = {};     
     
// Check if the key time exists in json      
if (json.time !== undefined){       
    // Add key time and value to output  
    output.time = json.time;  
}    
var ecs_trans=[]; 
var fluor_trace=[];  
var P700_trace=[];
   
var ecstrans=GetProtocolByLabel( "ftrans", json, true );
var rawY=[];  
var npulses=ecstrans[0].data_raw.length-2; 
output.npulses=npulses;

for (var i=0; i<ecstrans.length; i++){  // each time point
   var vals = [];  //rawY[ii].push(i);
  for (var ii=0; ii<npulses; ii++){  // each WASP pulse at eact time point 
    vals.push(ecstrans[i].data_raw[ii]); ///ecstrans[0].data_raw[ii]);
  }  
  fluor_trace.push(ecstrans[i].data_raw[npulses]);
  P700_trace.push(ecstrans[i].data_raw[npulses+1]); 
  rawY.push(vals);    
}  
 
//var fluor_trace=ecstrans[npulses].data_raw; 
output.fluor_trace=fluor_trace;
output.P700_trace=P700_trace; 
  
output.rawY=rawY[8]; 

output.rawYlength=rawY.length;
var diff_all=[];
 
for (var light=0; light<npulses;light++){
	var ecs=[];

    for (var i=0; i<rawY.length; i++){ 
      ecs.push(rawY[i][light]); 
    }
  ecs_trans.push(ecs);
}	
output.ecs_trans=ecs_trans;  

var diff_WASP=[];
 
for (var ii=0; ii<npulses; ii++){   
	var diff=[];   
    for (var i=0; i<rawY.length; i++){
      var difval=rawY[i][0] / rawY[i][ii];   
      difval=MathLOG(difval);
        diff.push(MathROUND(1000*difval, 3)); 
    }  
    diff = TransformTrace( "subtract", diff, MathMEAN(diff.slice(0,99)));
    diff=TransformTrace( "sgf", diff );
    //diff=TransformTrace( "sgf", diff );
  
    diff_all.push(diff); //json.set[3]["data_raw"][2];
    
    var d=[];
    for (var iii=0; iii<diff.length; iii++){ 
      d.push(MathROUND(diff[iii],4));
    }
    //output["diff#"+ii]="[" + d.join() + "]";
    var dw=MathMEAN(diff.slice(0,99))- MathMEAN(diff.slice(100,199));
    diff_WASP.push(MathROUND(dw,4));
} 
ecs=TransformTrace( "abs", ecs );	
output.diff=diff; 
output.diff_all=diff_all;
output.ecs=ecs; 
output.diff_WASP=diff_WASP;
//output.XXXXX=diff_all[1];
return output;

output.diff_all=diff_all.length; 

var av_diff_all=[]; //diff_all[0];

for (var i=0; i<4; i++) {
  var av_diff=diff_all[i].slice(0,200);
//  for (var ii=1; ii<npulses; ii++){
//	  av_diff=TransformTrace( "add", av_diff, diff_all[i].slice(ii*200, (ii+1)*200));
//  } 
  av_diff_all.push(av_diff); 
  }
 
output.av_diff_all=av_diff_all;
return output;

//  ecs_trans.push(ecstrans[i].data_raw);
//   var ymin=MathMIN(ftrans[i].data_raw.slice(0,10));
//    var ymax=MathMAX(ftrans[i].data_raw.slice(10,110));
// 	output["max." + i]=(ymax);
// 	output["FvFm." + i]=MathROUND((ymax-ymin)/ymax, 4);
//     fvfm_array.push(MathROUND((ymax-ymin)/ymax, 3))
//} 
// output.fvfm_vs_i=fvfm_array;

var av_baseline_kinetics=[];
var av_light_kinetics=[];


for (var i=0; i<npulses; i++) {
	 av_baseline_kinetics.push(MathMEAN(av_diff_all[i].slice(70,100)));
     av_light_kinetics.push(MathMEAN(av_diff_all[i].slice(100,130)));
     
}
output.av_baseline_kinetics=av_baseline_kinetics;
output.av_light_kinetics=av_light_kinetics;
var av_b_l_kinetics=TransformTrace("subtract", av_light_kinetics, av_baseline_kinetics);
output.av_b_l_kinetics=av_b_l_kinetics;

return output;
{
  "time": 1548083146251,
  "device_name": "MultispeQ",
  "device_version": "2",
  "device_id": "32:11:48:18",
  "device_battery": 106,
  "device_firmware": 2.0091,
  "sample": [
    [
      {
        "time": 1548083146251,
        "v_arrays": [
          [
            "20",
            "800",
            "20",
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            "20"
          ],
          [
            "10",
            "10000"
          ],
          [
            "100",
            "200",
            "500",
            "20",
            "200"
          ],
          [
            "6"
          ]
        ],
        "set_repeats": 5,
        "protocol_id": 1,
        "set": [
          {
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            "data_raw": [

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Dave in cap img 4615
Created by

David M. Kramer


Protocol connections:
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Latest Update:
28 days ago