test_gs_kin_3_i


This macro converts and displays a stream of environmental sensors data sets obtained using the _protocol_set_ feature.
/**
* Macro for data evaluation on PhotosynQ.org
* by: David M. Kramer
* created: 2017-05-12 @ 11:07:27

The macro converts a stream of environmental data sets obtained using the _protocol_set_ feature 
into arrays and displays them.

For example, the following protocol will take temperature_humidity_pressure2, and light_intensity
once per second for 20 times. 
[{ "_protocol_set_":
[
	{
		"environmental": [
		["temperature_humidity_pressure2"],
        ["light_intensity"]
		],
     "protocols":20,
     "protocols_delay":1000
	}
]
}]

The macro will generate one array for each sensor, i.,e. temperature2, humidity2 and PAR,
as well as time. The time array is not displayed unless you un-comment the following line:

 //output.timescale = output.time;

Note: It is important to exclude data sets that are arrays, especially data_raw. This is done 
by adding the "data_raw"] to the list exclude_these:

var exclude_these=["data_raw"];

The macro can be modified to exclude the output and display of other the paramters by adding 
the names to the list called exclude_these. For example, I do not want to see "data_raw", "r", 
"g", "b", "light_intensity_raw"

var exclude_these=["data_raw", "r", "g", "b", "light_intensity_raw"];

*/


// Define the output object here
var output = {};

output.tags=json.tags;

output.keys=Object.keys(json).join(",");

// Check if the key time exists in json
if (json.time !== undefined){

   //add values to exclude from the analyses
   var exclude_these=["data_raw", "r", "g", "b", "light_intensity_raw"];

	keys = Object.keys(json.set[2]); //find the keys to the sensors
   Object.keys(json.set[2]).join(","); //join them in a string for display
   number_sensors=keys.length;  // find the number of sensors
  
   output.number_sensors=number_sensors; //display the number of sensors
	
  
   // Add key time and value to output
   number_measurements=json.set.length;  	
   output.number_measurements=number_measurements;

  // var number_sensors = json.set[1]
 for (var j=0; j< number_sensors; j++){

   use_this_key=keys[j];
   if (exclude_these.indexOf(use_this_key)<0){
   temp=[];
  var i;
   for (i=1; i < number_measurements; i++){
     var t=json.set[i][use_this_key];
     temp.push(t);
   }
   output[use_this_key]=temp;
   }
 }
 //output.timescale = output.time;
}
var first_pt=31;
var slope_point=34;
var steady_state_point =88;

var slope1=[];
var slope2=[];
var slope3=[];

for (i=2; i<output.humidity2.length; i++){
  slope1.push(output.humidity2[i]-output.humidity2[i-1]);
  slope2.push((output.humidity2[i]-output.humidity2[i-2])/2);
  temp=[output.humidity2[i],output.humidity2[i-2], output.humidity2[i-3]];
   var m,a,b,c;
  var linreg = MathLINREG([1,2,3], temp);

  slope3.push(-1*linreg.m);
}


output.temp=keys[0];


output.max_slope1=MathROUND(MathMAX(slope1),2);
output.max_slope2=MathROUND(MathMAX(slope2),2);
var baseline=slope3[27];
output.max_slope3=MathROUND(MathMAX(slope3.slice(32,60))-baseline,2);
output.slope1=slope1;
output.slope2=slope2;
output.slope3=slope3;

output.first_value=MathROUND(output.humidity2[first_pt],2);
output.slope_value=MathROUND(output.humidity2[slope_point],2);
output.initial_slope=MathROUND((output.humidity2[slope_point]-output.humidity2[first_pt])/(slope_point-first_pt),2);
output.rh_change=MathROUND(output.humidity2[steady_state_point]-output.humidity2[first_pt],2);

output.rh_change_2=MathROUND((MathMAX(output.humidity2.slice(31,60))-MathMIN(output.humidity2.slice(20,40))),2);


var dt=[];
for (i=0; i< number_measurements; i++){
	dt.push(json.set[i].time - json.set[0].time);
}
  
output.dt=dt;
output.bar="-25.00 ▉▉▉▉▉▉▉▉▉▉▢▢▢▢▢▢▢▢▢▢▋🔴 1000";

output.leaf_color='rgb(68,189,120)';

// M=RH(leaf)*T(leaf)-RH(air)*T(air)
// constant*(delta_RH)/M

output.T_air_C=MathROUND(MathMEAN(output.temperature2.slice(31,90)),4);
output.T_leaf_C=MathROUND(MathMEAN(output.contactless_temp.slice(80,90)), 4);
output.T_air=MathROUND(output.T_air_C+273.15, 4);
output.T_leaf=MathROUND(output.T_leaf_C+273.15, 4);

output.T_air_C_i=MathROUND(MathMEAN(output.temperature2.slice(15,30)),4);
output.T_air_K_i=MathROUND(output.T_air_C_i+273.15, 4);

output.RH_air=MathROUND(output.humidity2[90]/100,4);

output.RH_air_i=MathROUND(output.humidity2[15]/100,4);


output.M_C=MathROUND(output.T_leaf_C-output.RH_air*output.T_air_C,4);
output.gs_C=MathROUND(output.rh_change_2/output.M_C,4);

output.M=MathROUND(output.T_leaf-output.RH_air*output.T_air,4);
output.gs=MathROUND(output.rh_change_2/output.M,4);

output.M_C_i=MathROUND(output.T_leaf_C-output.RH_air_i*output.T_air_C_i,4);
output.gs_C_i=MathROUND(output.rh_change_2/output.M_C_i,4);

output.M_i=MathROUND(output.T_leaf-output.RH_air_i*output.T_air_K_i,4);
output.gs_i=MathROUND(output.rh_change_2/output.M_i,4);

// Return data
output.leaf_air_T_diff=output.T_leaf-output.T_air;
output.leaf_air_T_diff_rel=(output.T_leaf-output.T_air)/output.T_air;

  
return output;

{
  "api_version": 3,
  "app_device": "x86-64",
  "app_name": "PhotosynQ",
  "app_os": "win",
  "app_version": "0.3.8",
  "datum_id": 571378,
  "datum_url": "https://photosynq.org/projects/2479/explore/571378",
  "device_battery": 12,
  "device_firmware": 1.2,
  "device_id": "01:12:53:20",
  "device_name": "MultispeQ",
  "device_version": "1",
  "location": [
    "42.7225788",
    "-84.4741999"
  ],
  "sample": [
    [
      {
        "time": [
          1499282532289,
          1499282532690,
          1499282533092,
          1499282533494,
          1499282533896,
          1499282534298,
          1499282534700,
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          1499282555731,
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          1499282556335,
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          1499282557845,
          1499282558147,
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          1499282561167,
          1499282561469,
          1499282561772,
          1499282562073,
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          1499282562979,
          1499282563281,
          1499282563583,
          1499282563885,
          1499282564187,
          1499282564489,
          1499282564791,
          1499282565093,
          1499282565395,
          1499282565697,
          1499282565998,
          1499282568360,
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        ],
        "light_intensity_raw": 0,
        "protocol_id": 1,
        "set": [
          {
            "time": 1499282532277,
            "blank:": "blank"
          },
          {
            "time": 1499282532289,
            "temperature2": 29.19,
            "humidity2": 50.363,
            "pressure2": 990.043,
            "contactless_temp": 25.47,
            "data_raw": null
          },
          {
            "time": 1499282532690,
            "temperature2": 29.2,
            "humidity2": 50.354,
            "pressure2": 990.064,
            "contactless_temp": 26.32,
            "data_raw": null
          },
          {
            "time": 1499282533092,
            "temperature2": 29.2,
            "humidity2": 50.343,
            "pressure2": 990.017,
            "contactless_temp": 26.28,
            "data_raw": null
          },
          {
            "time": 1499282533494,
            "temperature2": 29.2,
            "humidity2": 50.32,
            "pressure2": 990.06,
            "contactless_temp": 25.39,
            "data_raw": null
          },
          {
            "time": 1499282533896,
            "temperature2": 29.21,
            "humidity2": 50.31,
            "pressure2": 990.07,
            "contactless_temp": 25.43,
            "data_raw": null
          },
          {
            "time": 1499282534298,
            "temperature2": 29.21,
            "humidity2": 50.289,
            "pressure2": 990.075,
            "contactless_temp": 25.33,
            "data_raw": null
          },
          {
            "time": 1499282534700,
            "temperature2": 29.22,
            "humidity2": 50.267,
            "pressure2": 990.061,
            "contactless_temp": 25.47,
            "data_raw": null
          },
          {
            "time": 1499282535102,
            "temperature2": 29.22,
            "humidity2": 50.233,
            "pressure2": 990.057,
            "contactless_temp": 26.32,
            "data_raw": null
          },
          {
            "time": 1499282535504,
            "temperature2": 29.22,
            "humidity2": 50.212,
            "pressure2": 990.068,
            "contactless_temp": 25.39,
            "data_raw": null
          },
          {
            "time": 1499282535906,
            "temperature2": 29.23,
            "humidity2": 50.179,
            "pressure2": 990.049,
            "contactless_temp": 26.24,
            "data_raw": null
          },
          {
            "time": 1499282536308,
            "temperature2": 29.23,
            "humidity2": 50.167,
            "pressure2": 990.029,
            "contactless_temp": 26.24,
            "data_raw": null
          },
          {
            "time": 1499282536710,
            "temperature2": 29.24,
            "humidity2": 50.157,
            "pressure2": 990.036,
            "contactless_temp": 25.47,
            "data_raw": null
          },
          {
            "time": 1499282537112,
            "temperature2": 29.24,
            "humidity2": 50.136,
            "pressure2": 990.067,
            "contactless_temp": 25.39,
            "data_raw": null
          },
          {
            "time": 1499282537514,
            "temperature2": 29.25,
            "humidity2": 50.113,
            "pressure2": 990.067,
            "contactless_temp": 25.29,
            "data_raw": null
          },
          {
            "time": 1499282537916,
            "temperature2": 29.24,
            "humidity2": 50.103,
            "pressure2": 990.053,
            "contactless_temp": 25.39,
            "data_raw": null
          },
          {
            "time": 1499282538318,
            "temperature2": 29.24,
            "humidity2": 50.091,
            "pressure2": 990.068,
            "contactless_temp": 25.43,
            "data_raw": null
          },
          {
            "time": 1499282538720,
            "temperature2": 29.25,
            "humidity2": 50.103,
            "pressure2": 990.045,
            "contactless_temp": 25.57,
            "data_raw": null
          },
          {
            "time": 1499282539122,
            "temperature2": 29.26,
            "humidity2": 50.137,
            "pressure2": 990.057,
            "contactless_temp": 25.39,
            "data_raw": null
          },
          {
            "time": 1499282539524,
            "temperature2": 29.26,
            "humidity2": 50.16,
            "pressure2": 990.059,
            "contactless_temp": 25.47,
            "data_raw": null
          },
          {
            "time": 1499282539926,
            "temperature2": 29.27,
            "humidity2": 50.139,
            "pressure2": 990.049,
            "contactless_temp": 25.39,
            "data_raw": null
          },
          {
            "time": 1499282540328,
            "temperature2": 29.27,
            "humidity2": 50.116,
            "pressure2": 990.051,
            "contactless_temp": 26.18,
            "data_raw": null
          },
          {
            "time": 1499282540730,
            "temperature2": 29.27,
            "humidity2": 50.095,
            "pressure2": 990.055,
            "contactless_temp": 26.14,
            "data_raw": null
          },
          {
            "time": 1499282541133,
            "temperature2": 29.28,
            "humidity2": 50.095,
            "pressure2": 990.067,
            "contactless_temp": 26.38,
            "data_raw": null
          },
          {
            "time": 1499282541534,
            "temperature2": 29.27,
            "humidity2": 50.095,
            "pressure2": 990.051,
            "contactless_temp": 26.48,
            "data_raw": null
          },
          {
            "time": 1499282541936,
            "temperature2": 29.28,
            "humidity2": 50.084,
            "pressure2": 990.052,
            "contactless_temp": 26.38,
            "data_raw": null
          },
          {
            "time": 1499282542339,
            "temperature2": 29.28,
            "humidity2": 50.062,
            "pressure2": 990.025,
            "contactless_temp": 25.43,
            "data_raw": null
          },
          {
            "time": 1499282542740,
            "temperature2": 29.28,
            "humidity2": 50.04,
            "pressure2": 990.034,
            "contactless_temp": 25.43,
            "data_raw": null
          },
          {
            "time": 1499282543142,
            "temperature2": 29.29,
            "humidity2": 50.029,
            "pressure2": 990.028,
            "contactless_temp": 26.28,
            "data_raw": null
          },
          {
            "time": 1499282543544,
            "temperature2": 29.3,
            "humidity2": 50.02,
            "pressure2": 990.069,
            "contactless_temp": 25.53,
            "data_raw": null
          },
          {
            "time": 1499282543946,
            "temperature2": 29.29,
            "humidity2": 50.007,
            "pressure2": 990.048,
            "contactless_temp": 25.39,
            "data_raw": null
          },
          {
            "time": 1499282544349,
            "temperature2": 29.33,
            "humidity2": 50.737,
            "pressure2": 990.069,
            "contactless_temp": 25.09,
            "data_raw": null
          },
          {
            "time": 1499282548181,
            "temperature2": 29.34,
            "humidity2": 51.094,
            "pressure2": 990.065,
            "contactless_temp": 25.94,
            "data_raw": null
          },
          {
            "time": 1499282548483,
            "temperature2": 29.34,
            "humidity2": 51.696,
            "pressure2": 990.056,
            "contactless_temp": 26,
            "data_raw": null
          },
          {
            "time": 1499282548785,
            "temperature2": 29.35,
            "humidity2": 52.422,
            "pressure2": 990.07,
            "contactless_temp": 26.86,
            "data_raw": null
          },
          {
            "time": 1499282549087,
            "temperature2": 29.35,
            "humidity2": 53.101,
            "pressure2": 990.052,
            "contactless_temp": 25.15,
            "data_raw": null
          },
          {
            "time": 1499282549389,
            "temperature2": 29.35,
            "humidity2": 53.747,
            "pressure2": 990.041,
            "contactless_temp": 25.15,
            "data_raw": null
          },
          {
            "time": 1499282549692,
            "temperature2": 29.35,
            "humidity2": 54.505,
            "pressure2": 990.04,
            "contactless_temp": 25.15,
            "data_raw": null
          },
          {
            "time": 1499282549993,
            "temperature2": 29.36,
            "humidity2": 55.007,
            "pressure2": 990.04,
            "contactless_temp": 26,
            "data_raw": null
          },
          {
            "time": 1499282550295,
            "temperature2": 29.36,
            "humidity2": 55.453,
            "pressure2": 990.042,
            "contactless_temp": 25.19,
            "data_raw": null
          },
          {
            "time": 1499282550597,
            "temperature2": 29.36,
            "humidity2": 55.831,
            "pressure2": 990.064,
            "contactless_temp": 25.23,
            "data_raw": null
          },
          {
            "time": 1499282550899,
            "temperature2": 29.36,
            "humidity2": 56.188,
            "pressure2": 990.021,
            "contactless_temp": 25.23,
            "data_raw": null
          },
          {
            "time": 1499282551201,
            "temperature2": 29.37,
            "humidity2": 56.5,
            "pressure2": 990.068,
            "contactless_temp": 25.29,
            "data_raw": null
          },
          {
            "time": 1499282551503,
            "temperature2": 29.37,
            "humidity2": 56.801,
            "pressure2": 990.068,
            "contactless_temp": 25.29,
            "data_raw": null
          },
          {
            "time": 1499282551805,
            "temperature2": 29.37,
            "humidity2": 57.057,
            "pressure2": 990.037,
            "contactless_temp": 26.14,
            "data_raw": null
          },
          {
            "time": 1499282552107,
            "temperature2": 29.37,
            "humidity2": 57.38,
            "pressure2": 990.028,
            "contactless_temp": 25.29,
            "data_raw": null
          },
          {
            "time": 1499282552410,
            "temperature2": 29.37,
            "humidity2": 57.603,
            "pressure2": 990.03,
            "contactless_temp": 26.18,
            "data_raw": null
          },
          {
            "time": 1499282552711,
            "temperature2": 29.38,
            "humidity2": 57.771,
            "pressure2": 990.064,
            "contactless_temp": 25.39,
            "data_raw": null
          },
          {
            "time": 1499282553013,
            "temperature2": 29.38,
            "humidity2": 57.948,
            "pressure2": 990.034,
            "contactless_temp": 26.24,
            "data_raw": null
          },
          {
            "time": 1499282553315,
            "temperature2": 29.38,
            "humidity2": 58.093,
            "pressure2": 990.045,
            "contactless_temp": 26.24,
            "data_raw": null
          },
          {
            "time": 1499282553617,
            "temperature2": 29.38,
            "humidity2": 58.237,
            "pressure2": 990.064,
            "contactless_temp": 26.24,
            "data_raw": null
          },
          {
            "time": 1499282553919,
            "temperature2": 29.39,
            "humidity2": 58.361,
            "pressure2": 990.076,
            "contactless_temp": 25.39,
            "data_raw": null
          },
          {
            "time": 1499282554221,
            "temperature2": 29.38,
            "humidity2": 58.494,
            "pressure2": 990.036,
            "contactless_temp": 26.32,
            "data_raw": null
          },
          {
            "time": 1499282554523,
            "temperature2": 29.39,
            "humidity2": 58.627,
            "pressure2": 990.075,
            "contactless_temp": 25.47,
            "data_raw": null
          },
          {
            "time": 1499282554825,
            "temperature2": 29.39,
            "humidity2": 58.773,
            "pressure2": 990.094,
            "contactless_temp": 25.47,
            "data_raw": null
          },
          {
            "time": 1499282555129,
            "temperature2": 29.4,
            "humidity2": 58.887,
            "pressure2": 990.07,
            "contactless_temp": 25.53,
            "data_raw": null
          },
          {
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  "status": "submitted",
  "time": 1499282532277,
  "time_offset": 240,
  "user_answers": {
    "14905": "Cowpea_ Licor gs=0.668"
  },
  "user_id": 598,
  "notes": "https://photosynq.org/projects/2479/explore/571378"
}
Default avatar
Created by

Isaac Osei-Bonsu


Protocol connections:
1
Latest Update:
Jul 2017