STR Kinetics


STR Protocol
//============================================
// Macro for data evaluation on PhotosynQ.org
// created: 1.11.2017
//============================================

var data = json.data_raw;
var output = {};
var Fs = {};
var PhiII = {};
var baseline = 0;

var light_intensity =  {};




// initial values of F0 and Fm from dark adapted state.

var F0 = MathMEAN(data.slice(10,20)) - baseline;
var Fm = MathMEAN(data.slice(35,65)) - baseline;
var fvfm = (Fm-F0)/Fm;
output ["F0"] = MathROUND(F0,0);
output ["Fm"] = MathROUND(Fm,0);
output ["Fv/Fm"] = MathROUND(fvfm,3);

var F0P1 = MathMEAN(data.slice(115,145)) - baseline;
var FmP1 = MathMEAN(data.slice(170,195)) - baseline;
var fvfmP1 = (FmP1-F0P1)/FmP1;
output ["F0P1"] = MathROUND(F0P1,0);
output ["FmP1"] = MathROUND(FmP1,0);
output ["Fv/Fm P1"] = MathROUND(fvfmP1,3);

var F0P2 = MathMEAN(data.slice(250,280)) - baseline;
var FmP2 = MathMEAN(data.slice(300,325)) - baseline;
var fvfmP2 = (FmP2-F0P2)/FmP2;
output ["F0P2"] = MathROUND(F0P2,0);
output ["FmP2"] = MathROUND(FmP2,0);
output ["Fv/Fm P2"] = MathROUND(fvfmP2,3);

var F0P3 = MathMEAN(data.slice(500,530)) - baseline;
var FmP3 = MathMEAN(data.slice(560,585)) - baseline;
var fvfmP3 = (FmP3-F0P3)/FmP3;
output ["F0P3"] = MathROUND(F0P3,0);
output ["FmP3"] = MathROUND(FmP3,0);
output ["Fv/Fm P3"] = MathROUND(fvfmP3,3);

var F0P4 = MathMEAN(data.slice(640,665)) - baseline;
var FmP4 = MathMEAN(data.slice(685,715)) - baseline;
var fvfmP4 = (FmP4-F0P4)/FmP4;
output ["F0P4"] = MathROUND(F0P4,0);
output ["FmP4"] = MathROUND(FmP4,0);
output ["Fv/Fm P4"] = MathROUND(fvfmP4,3);;

var F0P5 = MathMEAN(data.slice(800,825)) - baseline;
var FmP5 = MathMEAN(data.slice(850,875)) - baseline;
var fvfmP5 = (FmP5-F0P5)/FmP5;
output ["F0P5"] = MathROUND(F0P5,0);
output ["FmP5"] = MathROUND(FmP5,0);
output ["Fv/Fm P5"] = MathROUND(fvfmP5,3);

var F0P6 = MathMEAN(data.slice(950,975)) - baseline;
var FmP6 = MathMEAN(data.slice(1000,1035)) - baseline;
var fvfmP6 = (FmP6-F0P6)/FmP6;
output ["F0P6"] = MathROUND(F0P6,0);
output ["FmP6"] = MathROUND(FmP6,0);
output ["Fv/Fm P6"] = MathROUND(fvfmP6,3);

var F0P7 = MathMEAN(data.slice(1115,1145)) - baseline;
var FmP7 = MathMEAN(data.slice(1160,1195)) - baseline;
var fvfmP7 = (FmP7-F0P7)/FmP7;
output ["F0P7"] = MathROUND(F0P7,0);
output ["FmP7"] = MathROUND(FmP7,0);
output ["Fv/Fm P7"] = MathROUND(fvfmP7,3);

var F0P8 = MathMEAN(data.slice(1270,1300)) - baseline;
var FmP8 = MathMEAN(data.slice(1325,1355)) - baseline;
var fvfmP8 = (FmP8-F0P8)/FmP8;
output ["F0P8"] = MathROUND(F0P8,0);
output ["FmP8"] = MathROUND(FmP8,0);
output ["Fv/Fm P8"] = MathROUND(fvfmP8,3);

var F0P9 = MathMEAN(data.slice(1430,1465)) - baseline;
var FmP9 = MathMEAN(data.slice(1480,1510)) - baseline;
var fvfmP9 = (FmP9-F0P9)/FmP9;
output ["F0P9"] = MathROUND(F0P9,0);
output ["FmP9"] = MathROUND(FmP9,0);
output ["Fv/Fm P9"] = MathROUND(fvfmP9,3);

var F0P10 = MathMEAN(data.slice(1600,1625)) - baseline;
var FmP10 = MathMEAN(data.slice(1645,1675)) - baseline;
var fvfmP10 = (FmP10-F0P10)/FmP10;
output ["F0P10"] = MathROUND(F0P10,0);
output ["FmP10"] = MathROUND(FmP10,0);
output ["Fv/Fm P10"] = MathROUND(fvfmP10,3);

var F0P11 = MathMEAN(data.slice(1750,1785)) - baseline;
var FmP11 = MathMEAN(data.slice(1800,1835)) - baseline;
var fvfmP11 = (FmP11-F0P11)/FmP11;
output ["F0P11"] = MathROUND(F0P11,0);
output ["FmP11"] = MathROUND(FmP11,0);
output ["Fv/Fm P11"] = MathROUND(fvfmP11,3);



var relSTR1 = (FmP1-Fm)/Fm;
var relSTR2 = (FmP2-Fm)/Fm;
var relSTR3 = (FmP3-Fm)/Fm;
var relSTR4 = (FmP4-Fm)/Fm;
var relSTR5 = (FmP5-Fm)/Fm;
var relSTR6 = (FmP6-Fm)/Fm;
var relSTR7 = (FmP7-Fm)/Fm;
var relSTR8 = (FmP8-Fm)/Fm;
var relSTR9 = (FmP9-Fm)/Fm;
var relSTR10 = (FmP10-Fm)/Fm;
var relSTR11 = (FmP11-Fm)/Fm;


output ["relSTR 1"] = MathROUND(relSTR1,3);
output ["relSTR 2"] = MathROUND(relSTR2,3);
output ["relSTR 3"] = MathROUND(relSTR3,3);
output ["relSTR 4"] = MathROUND(relSTR4,3);
output ["relSTR 5"] = MathROUND(relSTR5,3);
output ["relSTR 6"] = MathROUND(relSTR6,3);
output ["relSTR 7"] = MathROUND(relSTR7,3);
output ["relSTR 8"] = MathROUND(relSTR8,3);
output ["relSTR 9"] = MathROUND(relSTR9,3);
output ["relSTR 10"] = MathROUND(relSTR10,3);
output ["relSTR 11"] = MathROUND(relSTR11,3);

// illumination period

     
    

  
    
 //output ["Fs " + i] = MathROUND(Fs [i], 0);
 //output ["Fm' " + i] = MathROUND(FmP [i],0);
 //output ["F0' calc " + i] = MathROUND(f0p [i],0);
 //output ["PhiII " + i] = MathROUND(PhiII [i],3);
 

          




var thickness = json.thickness;
output ["thickness - mm "] = MathROUND(thickness , 4);

output ["baseline" ] = baseline;

output["Light Intensity (PAR)"] = json.light_intensity;
output["Temperature"] = json.temperature;
output["Humidity"] = json.humidity;
output["Pressure"] = json.pressure;
return output;
{
  "time_offset": -60,
  "time": 1509544557502,
  "device_name": "MultispeQ",
  "device_version": "1",
  "device_id": "01:06:11:94",
  "device_battery": 76,
  "device_firmware": 1.17,
  "sample": [
    {
      "time": 1509544557519,
      "protocol_id": 1,
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  "app_os": "win",
  "app_name": "PhotosynQ",
  "app_version": "0.3.9",
  "app_device": "x86-32",
  "location": [
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  ],
  "ConsoleMacro": "435"
}
Default avatar
Created by

Lars Dietzel


Protocol connections:
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Latest Update:
Nov 2017