pam_ecs_firk_1


This macro analyzes data from new looping capabilities.
/**
 * Macro for data evaluation of RIDES1 with looping 
 * data on PhotosynQ.org
 * by: David M. Kramer
 * created: 2018-02-06 
 */


// Define the output object here
var output = {}; //dictionary to hold results

output.t=json.set.length;

var FoFs_pts=[0,4];
var FmFmp_pts=[50,250];

var ctrace = [];
var FoFs = [];
var FmFmp = [];
var Phi2=[];
var PAR=[];

for (var i=0; i<json.set.length; i++){
  	if (json.set[i].label == "fluor"){
      ctrace.push(json.set[i].data_raw);
      FoFs.push(MathMEAN(json.set[i].data_raw.slice(FoFs_pts[0],FoFs_pts[1])));
      FmFmp.push(MathMEAN(json.set[i].data_raw.slice(FmFmp_pts[0],FmFmp_pts[1])));
      PAR.push(json.set[i].pre_illumination_par);
	}
}

output.complete_trace=ctrace;
output.FmFmp=FmFmp;
output.FoFs=FoFs;
output.PAR=PAR;
var ecs=[];

for (var i=0; i<json.set.length; i++){
  	if (json.set[i].label == "ecs"){
      ecs.push(json.set[i].data_raw);
	}
}

output.ecs_all=ecs;

var Phi2=[];
var NPQ=[];
var LEF=[];

for (var i=0; i<FoFs.length; i++){
	Phi2.push(1-(FoFs[i]/FmFmp[i]));
  	LEF.push(0.45*PAR[i]*(1-(FoFs[i]/FmFmp[i])));
  	NPQ.push((FmFmp[0]/FmFmp[i])-1);
}

output.Phi2=Phi2;
output.NPQ=NPQ;
output.LEF=LEF;
output.ecs_trace=ecs[6];

// Return data
return output;
{
  "time": 1518045737160,
  "device_name": "MultispeQ",
  "device_version": "1",
  "device_id": "01:12:37:32",
  "device_battery": 66,
  "device_firmware": 1.255,
  "sample": [
    [
      {
        "time": 1518045737161,
        "protocol_id": 1,
        "set": [
          {
            "time": 1518045737175,
            "label": "setup",
            "v_arrays": [
              [
                0,
                10,
                20,
                40,
                80,
                160,
                320,
                0
              ]
            ],
            "index": 0,
            "sel_vars": [
              0
            ],
            "data_raw": [

            ]
          },
          {
            "time": 1518045737175,
            "label": "fluor",
            "pre_illumination_led": 2,
            "pre_illumination_par": 0,
            "pre_illumination_time": 20000,
            "data_raw": [
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            ]
          },
          {
            "time": 1518045759048,
            "label": "fluor",
            "pre_illumination_led": 2,
            "pre_illumination_par": 0,
            "pre_illumination_time": 20000,
            "data_raw": [
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Dave in cap img 4615
Created by

David M. Kramer


Protocol connections:
1
Latest Update:
Feb 2018